Does anyone else encounter this issue?
This is what the warning "this doc may not be displayed correctly" really means. It is saying: "this PDF uses PDF features we do not yet support" (but without being so explicitly direct about the meaning).
But barring a recent bug that has broken everything, the cause is inside the particular PDF's because they use features that FF's render library does not yet support.
Can you provide any examples?
i always thought that probably they're just being cautions...
There is one thing they don't have enabled by default (at least it wasn't the last time i checked), however, that may also bring that warning up: PDF Forms.
You can enable them in about:config searching for pdfjs.renderInteractiveForms and setting it to true (but they probably have a reason not to).
This will enable you to fill pdf forms directly in the browser.
PDF.js is actually a very good tool. It's actually (again, the last time i checked) more powerful than Chromes's PDFium