1. You have difficulty explaining or articulating your ideas in general 2. You have difficulty translating your thoughts into physical interaction on the whiteboard.
For the second one, I just think of the whiteboard as a place to bookmark or store the stack of a discussion. Usually the rest flows from that idea for me.
Use the pad of paper as much as possible and then you get practice in converting thoughts into pictograms. Because you draw for only for yourself there is no fear of failure.
Its actually quite natural -- we used to live in caves and we drew pictures of the animals we would hunt.
Edit: I used to be terrible with whiteboards.
Could be too that you need to brush up on your drawing/diagramming skills...